Category: Interesting Molecules

Deep dives on interesting organic chemistry molecules with a focus on synthetic chemistry and use cases or any therapeutic mechanisms of action

  • Exceptions to the Octet Rule? Hexamethylbenzene Dication

    Exceptions to the Octet Rule? Hexamethylbenzene Dication

    Did you know that carbon was allegedly found to engage in six bonds? The strange hexamethylbenzene dication has attracted significant attention due to structure featuring a hyper-coordinated carbon. But can carbon be hypervalent?

    To add more confusion, this system is apparently like a transition-metal complex – though no metal can be found. If you want to make this at home, you just need some equally cursed Dewar benzene, one of the strongest super-acids we know, some hydrofluoric acid for good measure – and the utmost care to not turn your reaction into black tar. Here, we explain if this cursed molecule is an exception to the octet rule.

    Octet rule definition

    To refresh our memory, elements in the second period typically form compounds that satisfy the Octet rule which states that atoms strive to surround themselves with 8 valence electrons or 4 bond equivalents. However, once we go to lower periods, larger elements start to misbehave. For example, the halogen fluorine can’t expand its octet, but hypervalent iodine compounds like the Dess-Martin periodinane oxidant are common. Similarly, nitrogen is limited by the octet rule but it’s heavier and strange cousin antimony can form more than the four permissible bonds.

    But what about carbon, the favorite element of organic chemists? Does carbon follow the octet rule?

    We have previously discussed several exotic carbon species, like carbon 2+. This compound is an exception to the Octet rule but it’s hypovalent, not hypervalent. It’s made by oxidizing an already electron-deficient carbene, leaving it with only four instead of the desired eight valence electrons. To pick another example, we’ve also talked about carbones when looking at a dual Diazo-Wittig reagent. This stabilized bis-ylide looks very strange but is not out of order if you count its valence electrons.

    CH5+ (Methanium) and 2-Norbornyl cations

    To understand other compounds where carbon appears to have more than four bonds, we need to watch out for non-classical bonding. The simplest case, if you can call it simple, is protonated methane or CH5+. On first sight, you might think this is a pentavalent carbon – but beware, as carbon only has four available orbitals. The solution is that instead of having 5 2-center 2-electron bonds, two hydrogens are bound as H2 and partially share their sigma bond with carbon in a 3-center 2-electron bond. This means CH5+ looks more like H2 coordinated to CH3+.

    Because of their elusive nature, such non-classical cations were typically not isolated and just observed with methods like spectroscopy. One major breakthrough was in 2013, when a team of chemists finally managed to isolate the 2-norbonyl cation. It was long debated whether this was a rapidly equilibrating classical cation or rather non-classical, penta-coordinated carbon. The chemists cleverly used bromide abstraction from this precursor to generate the cation.

    The byproduct bromoaluminate anion nicely stabilizes this species, allowing the growth of, as they put it, slightly brownish but nearly colourless crystals. These were extremely labile towards normal atmosphere and room temperature, so the x-ray analysis had to be highly controlled at low temperatures of just 120 and even 40K.

    Still, they somehow made it work and confirmed the non-classical, symmetrical structure. The C-C double bond interacts with the primary carbocation through a 3-center 2-electron bond. As you would expect, this interaction is longer than a normal C-C single bond.

    The Hexamethylbenzene dication

    So compared to the disputed norbornyl cation, the hexamethylbenzene dication received much less attention. The cursed structure was however directly proposed upon its first synthesis 50 years ago, which I find quite impressive, based on just  NMR and some ancient computational methods. Still, it wasn’t clear which   structure was present – and we still need to answer if the carbon is truly hypervalent here.

    Fast forward to 2017, chemists finally rose to the challenge. Similar to the norbornyl cation, the key task was to stabilize the cation in a crystalline matrix that allowed characterization via x-ray analysis.

    Synthesis of a hexa-coordinated carbon

    You might think that the simplest way of generating the cation is to take hexamethylbenzene and oxidize the living hell out of it. This would be too easy for such an epic compound, so it doesn’t work. Instead, the strained, high-energy Dewar benzene isomer is more susceptible to the intended manipulations.

    It looks strange itself but can be made by bicyclo-trimerization of alkynes through [2+2] additions with aluminium trichloride as a Lewis acid. Oxidizing one of the double bonds is pretty simple, with one equivalent of perbenzoic acid delivering the epoxide. If we count the atoms, we simply need to remove O2- to get to the correct sum formula.

    Magic Acid for O2- abstraction

    This calls for magic acid. This is a mixture of fluorosulfuric acid, a super acid with a pKa equivalent of -10, and the hypervalent antimony pentafluoride. This Lewis acid forms very stable adducts with anything that has electron pairs. This leads fluorosulfuric acid to react with itself, generating an acid so devilish it can protonate the C-H bond in methane to give CH5+, the compound we’ve talked about earlier.

    The reaction is performed at extremely low temperatures given the dication instability. It requires masterful rinsing of frozen dewar benzene epoxide with the super acid mixture. If you swirl too fast – whatever that means – your precious reactants will turn into black tar. You know what we are missing? Of course, after forming the dication, we apparently need to add an excess of anhydrous HF to crystallize it out after some days at -80 °C. I like how the authors wrote ‘in the aftermath’, indicating this reaction is a wicked battle that will require attempts to get it just right.

    But how does this work mechanistically? It’s just guessing, but likely, the protonation of the epoxide triggers a rearrangement from the Dewar benzene framework into the bridged five-membered ring. The positive charge ends up at the top of the pyramid, stabilized by a 3 center 2 electron bond, reminiscent of the 2-norbornyl example we covered.

    This intramolecular rearrangement is very fast, but remember we are still in a soup of excess super-acid. Thus, another protonation finally gets rid of the oxygen, giving another carbocation. In similar fashion, we again oxidize the top carbon and create a cyclopentadiene at the bottom of the pyramid. This dication crystallizes with an entourage of two SbF6 anions and one molecule of fluorosulfuric acid.

    Crystal Structure of the Hexamethylbenzene dication

    The apical carbon binds the methyl group on the top and seems to interact with all five carbons of the pyramid base at a distance of roughly 1.7A. This is quite a bit longer than normal C-C single bonds, so you should not be surprised that these are not fully-fledged, classical two-electron bonds.

    Based on orbital computations, the multi-center p-electron interactions can be seen as having bond orders of roughly one half each. In total, the apical carbon experiences just below four bond equivalents. This means that just because it’s hexa-coordinated does not mean its hexavalent.

    By the way, the carbon NMR spectrum is pretty interesting – we see the ring carbons, the apical carbon, the five methyl groups at the base and at a negative chemical shift, the top methyl group which is extremely shielded. The chemists initially proposed that the system corresponds to a cyclopentadiene cation interacting with an ethyl-ylidene cation through a total of six electrons in the pyramid.

    However, subsequent research showed that there might be more than meets the eye here. Based on some fancy computations of effective oxidation states, they believe the cyclopentadienyl ligand is not cationic. Instead, it’s an aromatic cyclopentadiene donor anion and the top group is actually a formal methyl cation . This means the central carbon behaves like a transition metal with two modes of coordination. On one hand, it binds a donor anion as a Lewis acid, and on the other it donates an electron pair to the acceptor cation.

    Overall, this is an awesome system that remarkably, is stable enough for crystallization and x-ray analysis. It definitely adds to the list of strange carbon species.

    Thanks for reading!

    References

  • What is THCP? Synthesis of THCP & Cannabinoid Science

    What is THCP? Synthesis of THCP & Cannabinoid Science


    THCP or THC-P is a recently discovered cannabinoid found in the cannabis plant, joining the ranks of THC and CBD. It has garnered broad attention in cannabinoid research due to its therapeutic potential. There are some wild claims of potency out there. What are the real facts and science behind THCP and how is it chemically synthesized?

    What is THCP?

    Did you know that almost 150 distinct cannabinoids have been isolated to date? Cannabis sativa is a plant that sparks debates. Some see it as a valuable source of medicine for conditions like glaucoma and epilepsy. But, at the same time, it’s the most commonly used illegal drug worldwide.

    At a molecular level, THCP shares the basic framework common to cannabinoids such as tetrahydrocannabinol (THC / delta-9-THC) and cannabidiol (CBD). You can see the chemical structure in the figure.

    What sets THCP apart is its heptyl side chain. Chemically speaking, this is a seven-carbon alkyl group with the chemical formula -C7H15. THC on the other hand bears a pentyl group (-C5H11). The length of this chain directly influences binding to the CB receptors (see below) and thus the cannabimimetic activity. This side chain is also called the pharmacophore due to its influence on biochemical activity.

    THCP Flower Concentration

    The concentration of THC-P in Cannabis Sativa is estimated to be 0.0023% to 0.0136% (0.02–0.14 mg/g) [1]. In comparison, normal THC occurs in up to 30%! These levels seem too low to trigger significant effects or subtherapeutic.

    However, not only is THC-P a stronger CB binder than THC, but other phytochemicals may influence efficacy and experience of C. sativa use. Through a so-called entourage effect, there may be synergistic interactions with the major cannabinoids and other phytochemical components.

    Due to the low natural concentration, THC-P is more conveniently (for research purposes) synthesized chemically.

    How is THC-P Made? (Synthesis)

    The organic chemistry behind THCP is actually simple. The starting material is a chiral allylic alcohol for the enantioselective synthesis. The hydroxy group can be substituted with an aromatic ring bearing the linear side chain. Under acidic conditions, we have first the allylic substitution and second an addition of a phenol group to the olefin.

    Taken from: Scientific Reports 2019, 9, 20335 (Creative Commons 4.0)
    Reagents and conditions: (a) 5-heptylbenzene-1,3-diol (1.1 eq.), pTSA (0.1 eq.), CH2Cl2, r.t., 90 min.; (b) 5-heptylbenzene-1,3-diol (1.1 eq.), pTSA (0.1 eq.), DCM, r.t., 48 h; (c) pTSA (0.1 eq.), DCM, r.t., 48 h; (d) ZnCl2 (0.5 eq.), 4 N HCl in dioxane (1 mL per 100 mg of Δ8-THCP), dry DCM, argon, 0 °C to r.t., 2 h. (e) 1.75 M potassium t-amylate in toluene (2.5 eq.), dry toluene, argon, −15 °C, 1 h.

    The only issue in this very direct synthesis is the formation of olefin isomers. To get to the right configuration in THC-P, the intermediate (-)-trans8-THCP can be isomerized. This works through step-wise hydrochlorination and a surprisingly very selective elimination using potassium t-amylate as base.

    THC-P Mechanism of Action

    THC-P interacts with cannabinoid receptors CB1 and CB2 which are part of the so-called endocannabinoid system or ECS. The ECS is a complex network of receptors, endocannabinoids, and enzymes distributed throughout the body. It plays a crucial role in maintaining homeostasis which is the body’s self-regulation process.

    Early research suggests that THC-P may have a higher affinity for CB1 receptors, which are predominantly found in the central nervous system. CB1 receptors play a key role in regulating neurotransmitter release, impacting various physiological functions such as mood, appetite, and pain perception.

    Taken from: Scientific Reports 2019, 9, 20335 (Creative Commons 4.0)
    In vitro activity and docking calculation of Δ9-THCP. (a) Binding affinity (Ki) of the four homologues of Δ9-THC against CB1 and CB2. (b) Dose-response studies of Δ9-THCP against hCB1 and hCB2. (c) Docking pose of (-)-trans-Δ9-THCP (blue sticks), in complex with hCB1. (d) Binding pocket of hCB1 receptor, highlighting the positioning of the heptyl chain within the long hydrophobic channel of the receptor.

    The figure d) shows the binding very nicely. The yellow dashed line represents a pocket of hydrophobic amino acids where the linear alkyl side chains reside. Because the longer heptyl side chain has more contacts, it shouldn’t surprise you that THC-P had stronger binding compared to normal THC.

    As you can see in a), THC-P has a >30-fold and >6-fold increased binding for the cannabinoid receptor 1 (CB1) and cannabinoid receptor 2 (CB2). The affinity value of 1.2 nM (nanomolar) is very strong on a “molecular” level!

    However, the research is too immature to be able to say “how much more potent” it actually is. Nevertheless, preliminary evidence suggests that THC-P may modulate neurotransmitter release in a way that differentiates it from other cannabinoids. There are several areas of potential therapeutic application.

    THC-P Effects: Appetite Regulation

    One notable aspect of THC-P is its reported appetite-suppressant effects. We clearly need more research to understand the underlying mechanisms but this property raises the possibility of THC-P as a tool for weight management and addressing conditions related to overeating. A study conducted on rodents investigated the effects of THC-P on feeding behavior. The results suggested that THC-P administration led to a reduction in food intake, providing initial support for its appetite-modulating properties.

    THC-P Mood Disorders and Anxiety

    The interaction of THC-P with CB1 receptors, particularly in the brain, points to potential applications in mood disorders and anxiety management. The modulation of neurotransmitter release in key brain regions may offer a novel approach to addressing conditions characterized by mood imbalances. However, preclinical studies have so far only indicated the anxiolytic potential of cannabinoids in general, not THC-P specifically.

    THCP Epilepsy

    THC-P may hold promise for neurological conditions. Conditions such as epilepsy and neurodegenerative disorders might benefit from further investigation into THC-P’s effects on neuronal excitability and neuroinflammation. Preliminary data from animal studies has shown cannabinoids, including THC-P, to have anticonvulsant properties.

    Is THCP Legal?

    The legal status of THC-P varies by country. In the United States, THCP unlike THC is not specifically listed as a Controlled Substance federally. However, regulations vary by state or country. In the rest of the world, THCP is currently legal in Germany, for example. Other countries classify THC-P as a controlled substance. With the current dynamic regarding medical use of cannabis, shifts in legal stands and regulations are to be expected. We have discussed increasing interest on the public level on psychedelic compounds such as ibogaine or psilocybin/ psilocin.

    Is THCP Safe?

    Given the early days of THCP research, safety aspects, particularly in humans, are not clear. The psychotropic effects of THC-P could raise concerns, particularly regarding cognitive function and the potential for dependence. Long-term studies are essential to assess the safety profile and any adverse effects associated with THC-P use.

    In addition, it will be key to establish standardized testing methods to validate high-quality material for research purposes. Standardization is essential for accurate dosing, reproducibility of results, and ensuring the reliability of research.

    As THCP is present in only little amounts in C. sativa, THCP products on the market may have been produced synthetically and not have been tested for safety, purity, or potency. Thus, we discourage consumption of (any) supposedly safe drugs and medicines in absence of professional medical oversight and need.

    Summary

    THC-P, with its distinctive molecular structure and potential therapeutic applications, represents a promising avenue for cannabinoid research. As our understanding of its chemical properties and interactions with the endocannabinoid system deepens, the door opens to innovative approaches in medical science.

    While challenges exist, the increasing scientific interest suggest that THC-P could play a significant role in the future of medicine. Responsible research, transparent communication, and thoughtful regulation are paramount in unlocking the full potential of THC-P, other cannabinoids and medicines at large.

    Information for THCP

    • J. Nat. Prod. 2021, 84, 2, 531 | (−)-trans-Δ9‑Tetrahydrocannabiphorol Content of Cannabis sativa Inflorescence from Various Chemotypes
    • Scientific Reports 2019, 9, 20335 | A novel phytocannabinoid isolated from Cannabis sativa L. with an in vivo cannabimimetic activity higher than Δ9-tetrahydrocannabinol: Δ9-Tetrahydrocannabiphorol